PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_E0345D5DF.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 355aa    MW: 38130.4 Da    PI: 10.8004
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_E0345D5DF.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.8e-30289346359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ ++p ++++tYegeH h+
  Traes_5BS_E0345D5DF.2 289 DEYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERCVDEPVMLIVTYEGEHSHN 346
                            9************************9888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.8E-18240285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-32275347IPR003657WRKY domain
PROSITE profilePS5081129.402282348IPR003657WRKY domain
SuperFamilySSF1182902.62E-26285347IPR003657WRKY domain
SMARTSM007742.5E-35287347IPR003657WRKY domain
PfamPF031068.3E-26289345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEEVEAANSA AVESCHKLLA LLSQQQDPAL LRSIASETGE ACAKFRKVVS LLSNGGGGRG  60
GHARGRFSRR RKPVGFLSQK GFLESSSNTP LGMLMSGSAP TPSPSAASAA QLRPQVGAPP  120
QPRSLDLVSS SSKSAHQFGP PKMVQPLSVQ FQFGATAHRY PFQQQQQNLQ AQMFKRSNSG  180
ISLKFDSPSG GAGTISSPRS FMSSLSMDGS VASLDGKPPM RLLGGPAASD TLNVRQCAPK  240
RRCTGRGEDG SGKCTTGGKC HCSKRRKLRI KRSIKVPAIS NKISDIPPDE YSWRKYGQKP  300
IKGSPHPRGY YKCSTVRGCP ARKHVERCVD EPVMLIVTYE GEHSHNRLPT QSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19275349275WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747470.0AK374747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3075F07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664169.10.0PREDICTED: protein WRKY1
SwissprotQ93WU66e-94WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLW5FP690.0W5FP69_WHEAT; Uncharacterized protein
STRINGMLOC_56247.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.17e-62WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]